PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0027ss00260.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 208aa    MW: 23320.9 Da    PI: 4.6706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0027ss00260.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.81.3e-134992955
                AP2  9 dkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ +grW+A+I   +   g +k+ +lg++gt+eeAa a++ a+ +++g
  Vang0027ss00260.2 49 HHHNGRWEARIGRvF---G-NKYLYLGTYGTEEEAAVAYDMAAIEYRG 92
                       6779******99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.60634100IPR001471AP2/ERF domain
SMARTSM003803.1E-1949106IPR001471AP2/ERF domain
PfamPF008474.8E-94992IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1549102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-1450101IPR001471AP2/ERF domain
CDDcd000182.01E-2150102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
LAALKYWGPE TVLNFPLSNY EQQLKEMEDQ SKEEYIGSLR RFFLITDLHH HNGRWEARIG  60
RVFGNKYLYL GTYGTEEEAA VAYDMAAIEY RGLNAVTNFD LSRYMKWLRP KDQSQPRLQA  120
HDDSPSPTPS GPESRNATST LGPPPPPPPS SPSTSNLPPR PPRTFPEDIQ TLFETQDSAG  180
IYTDTDDIIF GDLTSIASPI FHCDLNA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500296.11e-106PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN49e-59AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0S3SF041e-121A0A0S3SF04_PHAAN; Uncharacterized protein
STRINGPOPTR_0003s18350.14e-75(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.23e-55ARIA-interacting double AP2 domain protein